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MEPS 753:55-72 (2025)  -  DOI: https://doi.org/10.3354/meps14769

Inorganic nitrogen pathways in oyster holobionts and underneath sediments studied via 15N-based methods

Samuele Pagani1,2,*, Sara Benelli1, Marco Bartoli1,3

1Department of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 33/A, 43124 Parma, Italy
2International Marine Centre—IMC Foundation, Loc. Sa Mardini 09170, Torregrande, Oristano, Italy
3Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Genoa Marine Centre, Villa del Principe, Piazza del Principe 4, 16126 Genoa, Italy
*Corresponding author:

ABSTRACT: Oyster biofilms have significant potential as reactors for excreted nitrogen (N) via assimilative, dissimilative and oxidative pathways. However, the interplay between molluscs, associated microbes and microalgae within biofilms is not well characterized. This work aimed to quantify dark and light oxygen (O2) fluxes and N transformations in biofilm-colonised and biofilm-free oyster holobionts (i.e. oysters and their associated microbial communities) and to contrast N processes in oyster holobionts with those underneath the sediments. Oysters and sediments were collected from Goro Lagoon in northern Italy. Measurements were carried out in mesocosms and cores, tracing the fate of 15N-labelled ammonium (NH4+) and nitrate (NO3-). We hypothesized the dominance of assimilative and dissimilative N pathways under light and dark conditions, respectively, and large stimulation of NO3- reduction in sediments underneath oysters due to biodeposits. Oyster holobionts, regardless of biofilm presence or absence on their outer shells and the presence or absence of illumination, were net O2 sinks and NH4+ and NO3- sources to the water column. Biofilm photosynthesis was insufficient to contrast respiratory O2 demand but promoted nitrification of excreted NH4+. Nitrification and denitrification were also recorded in biofilm-free oysters, suggesting active nitrifying and denitrifying microbial communities inside molluscs. Denitrification efficiency measured in biofilm-colonised and biofilm-free oyster holobionts was <10%, suggesting that oysters in the Goro Lagoon are weak N sinks and promote its recycling. Sediments receiving biodeposits recycled NH4+ at rates comparable to control sediments; however, the former displayed higher denitrification rates. N processes mediated by oyster holobionts largely exceeded those occurring in sediments.


KEY WORDS: Magallana (Crassostrea) gigas · Biofilm · Nitrogen recycling · Nitrification · Excretion · Denitrification


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Cite this article as: Pagani S, Benelli S, Bartoli M (2025) Inorganic nitrogen pathways in oyster holobionts and underneath sediments studied via 15N-based methods. Mar Ecol Prog Ser 753:55-72. https://doi.org/10.3354/meps14769

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